FEAST (Forage Euphausiid in Space and Time NPRB B.70 Model output for 1970-2009 Hindcast (Run V146), Kerim Aydin and Andre Punt

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Metadata:


Identification_Information:
Citation:
Citation_Information:
Originator:
Ivonne Ortiz, Kerim Aydin, Al Hermann, Georgina Gibson, Enrique Curchitser
Publication_Date: Unpublished material
Title:
FEAST (Forage Euphausiid in Space and Time NPRB B.70 Model output for 1970-2009 Hindcast (Run V146), Kerim Aydin and Andre Punt
Geospatial_Data_Presentation_Form: tabular digital data
Description:
Abstract:
Part of The Bering Sea Project, FEAST is a high resolution (~10km2) spatial model that uses a Regional Ocean Modeling System for the Bering Sea (ROMS Bering-10K), with two way feedback to a Nutrient-Phytoplankton-Zooplankton Model and two way feedback to a multispecies bioenergetics fish model.
Purpose:
The set of files contain the necessary code and directory structure to run simulations of oceanographic, lower trophic levels and fish related variables. Output provides deterministic estimates for the biophysics, lower trophic levels and fish. The code is in fortran; the calculations are computer intensive and is setup for parallel processing in a high performance computing cluster. Forcing files and file structure included are for the period 1970-2009.
Supplemental_Information:
The following weeks (year_week) need to be run at a smaller timestep to prevent some physical variables from blowing up (mainly velocities close to shore): 1971_1, 1972_48, 1974_48, 1977_47, 1984_5, 1989_47, 1990_48, 2004_51, 2004_52. Examine the commands in kerim-make.sh to determine how to compile; The model is run the same as any standard ROMS model. The file system provided is in exactly the way it should be set up for the model to run; the initial file is good to go and shell files were included to provide examples of how to run FEAST. This is not an entry level model, and potential users would be better served learning about ROMS first and then contacting us directly. Experienced ROMS users will quickly recognize format and files, ROMS based models are written in Fortran (so is FEAST). Full documentation of ROMS (Technical documentation, User guide, as well as Examples and applications are available at https://www.myroms.org/wiki/index.php/Documentation_Portal. This portal docuemnts how to parametrize the files referred to in the shell scripts Sample shell (.sh) scripts of how to run FEAST are included in the feast_ten folder, the latest version that runs only one simulation job at a time is kerim-ten-summer-promiojob1-allcores. Several jobs may be run simultaneously but care must be taken to either include the appropriate ghost links or change file names so as to not substitute parameter/ initial files inadvertedly. Also note that this will have to be tuned to the compiler, core structure, and paths of your system. For further details, consult the ROMS documentation.
Time_Period_of_Content:
Time_Period_Information:
Range_of_Dates/Times:
Beginning_Date: 197001
Ending_Date: 200912
Currentness_Reference: ground condition
Status:
Progress: Complete
Maintenance_and_Update_Frequency: none
Spatial_Domain:
Description_of_Geographic_Extent:
Bering Sea from Bering Strait and central Gulf of Alaska to Kamtchatka Peninsula, Russia
Bounding_Coordinates:
West_Bounding_Coordinate: 156.0
East_Bounding_Coordinate: -145.0
North_Bounding_Coordinate: 70.0
South_Bounding_Coordinate: 45.0
Keywords:
Theme:
Theme_Keyword_Thesaurus: ISO19115
Theme_Keyword: Biota
Theme_Keyword: Environment
Theme_Keyword: Oceans
Theme:
Theme_Keyword_Thesaurus: none
Theme_Keyword: FEAST
Theme_Keyword: ROMS
Theme_Keyword: NPZ
Theme_Keyword: hindcast
Theme_Keyword: model output
Theme_Keyword: end to end models
Theme_Keyword: BSIERP
Theme_Keyword: physical oceanography
Theme_Keyword: lower trophic levels
Place:
Place_Keyword_Thesaurus: none
Place_Keyword: Alaska
Place_Keyword: Bering Sea
Taxonomy:
Keywords/Taxon:
Taxonomic_Keyword_Thesaurus: none
Taxonomic_Keywords: phytoplankton
Taxonomic_Keywords: zooplankton
Taxonomic_Keywords: invertebrates
Taxonomic_Keywords: crab
Taxonomic_Keywords: forage fish
Taxonomic_Keywords: groundfish
Taxonomic_Keywords: arrowtooth flounder
Taxonomic_Keywords: collection
Taxonomic_Keywords: pollock
Taxonomic_Classification:
Taxon_Rank_Name: Kingdom
Taxon_Rank_Value: Animalia
Applicable_Common_Name: animals
Taxonomic_Classification:
Taxon_Rank_Name: Subkingdom
Taxon_Rank_Value: Bilateria
Taxonomic_Classification:
Taxon_Rank_Name: Infrakingdom
Taxon_Rank_Value: Protostomia
Taxonomic_Classification:
Taxon_Rank_Name: Superphylum
Taxon_Rank_Value: Ecdysozoa
Taxonomic_Classification:
Taxon_Rank_Name: Phylum
Taxon_Rank_Value: Arthropoda
Applicable_Common_Name: arthropods
Taxonomic_Classification:
Taxon_Rank_Name: Subphylum
Taxon_Rank_Value: Crustacea
Applicable_Common_Name: crustaceans
Taxonomic_Classification:
Taxon_Rank_Name: Class
Taxon_Rank_Value: Malacostraca
Taxonomic_Classification:
Taxon_Rank_Name: Subclass
Taxon_Rank_Value: Eumalacostraca
Taxonomic_Classification:
Taxon_Rank_Name: Superorder
Taxon_Rank_Value: Eucarida
Taxonomic_Classification:
Taxon_Rank_Name: Order
Taxon_Rank_Value: Euphausiacea
Applicable_Common_Name: krill
Taxonomic_Classification:
Taxon_Rank_Name: Superphylum
Taxon_Rank_Value: Lophozoa
Taxonomic_Classification:
Taxon_Rank_Name: Phylum
Taxon_Rank_Value: Mollusca
Applicable_Common_Name: mollusks
Taxonomic_Classification:
Taxon_Rank_Name: Class
Taxon_Rank_Value: Cephalopoda
Applicable_Common_Name: octopuses
Applicable_Common_Name: squids
Taxonomic_Classification:
Taxon_Rank_Name: Subclass
Taxon_Rank_Value: Coleoidea
Taxonomic_Classification:
Taxon_Rank_Name: Superorder
Taxon_Rank_Value: Decabrachia
Taxonomic_Classification:
Taxon_Rank_Name: Order
Taxon_Rank_Value: Teuthida
Taxonomic_Classification:
Taxon_Rank_Name: Infrakingdom
Taxon_Rank_Value: Deuterostomia
Taxonomic_Classification:
Taxon_Rank_Name: Phylum
Taxon_Rank_Value: Chordata
Applicable_Common_Name: chordates
Taxonomic_Classification:
Taxon_Rank_Name: Subphylum
Taxon_Rank_Value: Vertebrata
Applicable_Common_Name: vertebrates
Taxonomic_Classification:
Taxon_Rank_Name: Infraphylum
Taxon_Rank_Value: Gnathostomata
Taxonomic_Classification:
Taxon_Rank_Name: Superclass
Taxon_Rank_Value: Osteichthyes
Applicable_Common_Name: bony fishes
Taxonomic_Classification:
Taxon_Rank_Name: Class
Taxon_Rank_Value: Actinopterygii
Applicable_Common_Name: ray-finned fishes
Applicable_Common_Name: spiny rayed fishes
Taxonomic_Classification:
Taxon_Rank_Name: Subclass
Taxon_Rank_Value: Neopterygii
Applicable_Common_Name: neopterygians
Taxonomic_Classification:
Taxon_Rank_Name: Infraclass
Taxon_Rank_Value: Teleostei
Taxonomic_Classification:
Taxon_Rank_Name: Superorder
Taxon_Rank_Value: Clupeomorpha
Taxonomic_Classification:
Taxon_Rank_Name: Order
Taxon_Rank_Value: Clupeiformes
Applicable_Common_Name: anchovies
Applicable_Common_Name: herrings
Taxonomic_Classification:
Taxon_Rank_Name: Suborder
Taxon_Rank_Value: Clupeoidei
Taxonomic_Classification:
Taxon_Rank_Name: Family
Taxon_Rank_Value: Clupeidae
Applicable_Common_Name: herrings
Applicable_Common_Name: menhadens
Applicable_Common_Name: pilchards
Applicable_Common_Name: sardines
Applicable_Common_Name: sprats
Applicable_Common_Name: shads
Taxonomic_Classification:
Taxon_Rank_Name: Subfamily
Taxon_Rank_Value: Clupeinae
Applicable_Common_Name: herrings
Applicable_Common_Name: sardines
Applicable_Common_Name: sprats
Taxonomic_Classification:
Taxon_Rank_Name: Genus
Taxon_Rank_Value: Clupea
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Clupea pallasii
Applicable_Common_Name: Pacific herring
Taxonomic_Classification:
Taxon_Rank_Name: Superorder
Taxon_Rank_Value: Protacanthopterygii
Taxonomic_Classification:
Taxon_Rank_Name: Order
Taxon_Rank_Value: Osmeriformes
Applicable_Common_Name: argentines
Applicable_Common_Name: smelts
Taxonomic_Classification:
Taxon_Rank_Name: Suborder
Taxon_Rank_Value: Osmeroidei
Taxonomic_Classification:
Taxon_Rank_Name: Superfamily
Taxon_Rank_Value: Osmeroidea
Taxonomic_Classification:
Taxon_Rank_Name: Family
Taxon_Rank_Value: Osmeridae
Applicable_Common_Name: smelts
Taxonomic_Classification:
Taxon_Rank_Name: Genus
Taxon_Rank_Value: Mallotus
Applicable_Common_Name: capelins
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Mallotus villosus
Applicable_Common_Name: capelin
Taxonomic_Classification:
Taxon_Rank_Name: Genus
Taxon_Rank_Value: Thaleichthys
Applicable_Common_Name: eulachons
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Thaleichthys pacificus
Applicable_Common_Name: eulachon
Taxonomic_Classification:
Taxon_Rank_Name: Superorder
Taxon_Rank_Value: Paracanthopterygii
Taxonomic_Classification:
Taxon_Rank_Name: Order
Taxon_Rank_Value: Gadiformes
Applicable_Common_Name: grenadiers
Applicable_Common_Name: gadiforms
Applicable_Common_Name: cods
Applicable_Common_Name: hakes
Taxonomic_Classification:
Taxon_Rank_Name: Family
Taxon_Rank_Value: Gadidae
Applicable_Common_Name: codfishes
Applicable_Common_Name: true cods
Applicable_Common_Name: cods
Taxonomic_Classification:
Taxon_Rank_Name: Subfamily
Taxon_Rank_Value: Gadinae
Applicable_Common_Name: cods
Applicable_Common_Name: haddock
Taxonomic_Classification:
Taxon_Rank_Name: Genus
Taxon_Rank_Value: Gadus
Applicable_Common_Name: common codfishes
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Gadus macrocephalus
Applicable_Common_Name: Pacific cod
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Gadus chalcogrammus
Applicable_Common_Name: Walleye Pollock
Taxonomic_Classification:
Taxon_Rank_Name: Superorder
Taxon_Rank_Value: Acanthopterygii
Taxonomic_Classification:
Taxon_Rank_Name: Order
Taxon_Rank_Value: Scorpaeniformes
Applicable_Common_Name: mail-cheeked fishes
Applicable_Common_Name: scorpion fishes
Applicable_Common_Name: sculpins
Taxonomic_Classification:
Taxon_Rank_Name: Suborder
Taxon_Rank_Value: Hexagrammoidei
Applicable_Common_Name: greenlings
Taxonomic_Classification:
Taxon_Rank_Name: Family
Taxon_Rank_Value: Hexagrammidae
Applicable_Common_Name: greenlings
Taxonomic_Classification:
Taxon_Rank_Name: Genus
Taxon_Rank_Value: Pleurogrammus
Applicable_Common_Name: atka mackerels
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Pleurogrammus monopterygius
Applicable_Common_Name: Atka mackerel
Taxonomic_Classification:
Taxon_Rank_Name: Order
Taxon_Rank_Value: Perciformes
Applicable_Common_Name: perch-like fishes
Taxonomic_Classification:
Taxon_Rank_Name: Suborder
Taxon_Rank_Value: Trachinoidei
Applicable_Common_Name: stargazers
Applicable_Common_Name: weevers
Taxonomic_Classification:
Taxon_Rank_Name: Family
Taxon_Rank_Value: Ammodytidae
Applicable_Common_Name: sand lances
Taxonomic_Classification:
Taxon_Rank_Name: Genus
Taxon_Rank_Value: Ammodytes
Applicable_Common_Name: sand lances
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Ammodytes hexapterus
Applicable_Common_Name: Pacific sand lance
Taxonomic_Classification:
Taxon_Rank_Name: Superorder
Taxon_Rank_Value: Scopelomorpha
Taxonomic_Classification:
Taxon_Rank_Name: Order
Taxon_Rank_Value: Myctophiformes
Taxonomic_Classification:
Taxon_Rank_Name: Family
Taxon_Rank_Value: Myctophidae
Applicable_Common_Name: lanternfishes
Access_Constraints:
There are no legal restrictions on access to the data. They reside in public domain and can be freely distributed.
Use_Constraints:
Must cite originator if used in publications, reports, presentations, etc.
Point_of_Contact:
Contact_Information:
Contact_Organization_Primary:
Contact_Organization:
National Oceanic and Atmospheric Administration (NOAA) Alaska Fisheries Science Center (AFSC) Resource Ecology and Fisheries Management Division (REFM)
Contact_Address:
Address_Type: mailing and physical
Address: 7600 Sand Point Way N.E., Bldg. 4
City: Seattle
State_or_Province: WA
Postal_Code: 98115
Country: USA
Contact_Voice_Telephone: not available
Contact_Electronic_Mail_Address: kerim.aydin@noaa.gov
Native_Data_Set_Environment:
fortran code, netCDF files with starting conditions and forcing files (1971-2009)

Data_Quality_Information:
Attribute_Accuracy:
Attribute_Accuracy_Report:
file structure, code and forcing files files for deterministic model FEAST coupled to ROMS and NPZ
Logical_Consistency_Report: not applicable
Completeness_Report:
entire sert of files needed to run simulation are included in folder FEAST code files run V146
Lineage:
Methodology:
Methodology_Type: model
Methodology_Description: Final report to NPRB B70 FEAST
Methodology_Citation:
Citation_Information:
Originator: Ivonne Ortiz, Kerim Aydin, Andre Punt
Publication_Date: Unpublished material
Title: Final Report to NPRB B70 FEAST model
Geospatial_Data_Presentation_Form: document
Process_Step:
Process_Description:
ROMS is used as the platform, the model is started in July 1 1970, with the fish being able to move but not grow. This is to get a starting date of January 1971 with fish distributed where there is prey available. Summer fish distribution is taken from the average distribution of fish in a neutral year based on data from yearly 1982-2009 bottom trawl surveys coinducted by the Alaska Fisheries Science Center. For conveneince, we have included the starting conditions for January. Simulation took place in July-August 2013 at the Alaska Fisheries Science Center, code was developed 2007-2013 and is still in development
Process_Date: Not complete

Spatial_Data_Organization_Information:
Direct_Spatial_Reference_Method: Point

Spatial_Reference_Information:
Horizontal_Coordinate_System_Definition:
Geographic:
Latitude_Resolution: 0.1
Longitude_Resolution: 0.1
Geographic_Coordinate_Units: Decimal degrees
Vertical_Coordinate_System_Definition:
Depth_System_Definition:
Depth_Datum_Name: Local surface
Depth_Resolution: 0.1
Depth_Distance_Units: meters
Depth_Encoding_Method: Attribute values

Entity_and_Attribute_Information:
Detailed_Description:
Entity_Type:
Entity_Type_Label: Code files for FEAST hindcast simulation 1971-2009 run V146
Entity_Type_Definition: Grid is ~10km2 resolution with a size of (x,y) 182 x 258
Entity_Type_Definition_Source: AFSC
Overview_Description:
Entity_and_Attribute_Overview:
The current setup in the files produces weekly files. Forcing files and parameter files included correspond to those ued to run a hindcast for the period 1971-2009
Entity_and_Attribute_Detail_Citation:
Detailed description of the ROMS and NPZ projects can be obtained from NSF final reports

Distribution_Information:
Distributor:
Contact_Information:
Contact_Organization_Primary:
Contact_Organization: National Center for Atmospheric Research
Contact_Person: Earth Observing Laboratory
Contact_Address:
Address_Type: mailing and physical
Address: 3450 Mitchell Lane
City: Boulder
State_or_Province: CO
Postal_Code: 80301
Country: USA
Contact_Voice_Telephone: 303-497-8154
Contact_Electronic_Mail_Address: codiac@ucar.edu
Contact_Electronic_Mail_Address: stott@ucar.edu
Distribution_Liability:
No warranty expressed or implied is made regarding the accuracy or utility of the data, nor shall the act of distribution constitute any such warranty. This disclaimer applies both to individual use of the data and aggregate use with other data. It is strongly recommended that careful attention be paid to the contents of the metadata file associated with the data. The NCAR and NPRB shall not be held liable for improper or incorrect use of the data described and/or contained herein.
Standard_Order_Process:
Digital_Form:
Digital_Transfer_Information:
Format_Name: XLS
File_Decompression_Technique: No compression applied
Digital_Transfer_Option:
Online_Option:
Computer_Contact_Information:
Network_Address:
Network_Resource_Name: <http://beringsea.eol.ucar.edu>
Fees: None

Metadata_Reference_Information:
Metadata_Date: 20140403
Metadata_Contact:
Contact_Information:
Contact_Organization_Primary:
Contact_Organization:
North Pacific Research BoardIgor KatrayevIgor KatrayevIgor Katrayev
Contact_Person: Igor Katrayev
Contact_Position: Data Systems Manager
Contact_Address:
Address_Type: mailing and physical
Address: 1007W 3rd Ave Ste 100
City: Anchorage
State_or_Province: AK
Postal_Code: 99501
Country: USA
Contact_Voice_Telephone: 1-907-644-6700
Contact_Facsimile_Telephone: 1-907-644-6780
Contact_Electronic_Mail_Address: admin@nprb.org
Metadata_Standard_Name:
FGDC Biological Data Profile of the Content Standard for Digital Geospatial Metadata
Metadata_Standard_Version: FGDC-STD-001.1-1999

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